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A chemical pregnancy occurs when the embryo attaches, implants and begins to grow, but fails to progress. This can be caused by a problem with the embryo (usually genetic) or a problem with the endometrium (i.e. blood clotting or immune problems). Recent evidence is showing an association between endometriosis and autoimmune diseases. It is possible that endometriosis may induce abnormal NK activation. This would result in the implanting embryo being recognized as "foreign" by the NK cells and delt with accordingly. Although embryos are "foreign", the endometrium is usually a immunologically "privileged" environment that allows "foreign" tissues to grow.
I think that the immune testing is a good idea.
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