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As you get older, there can be considerable fluctuation in the number of follicles that begin to grow each cycle. The medications do not affect the number of follicles that start growing, just their rate of growth after they do start growing. So it wasn't a medication or protocol issue. Since how many follicles that begin to grow on a given cycle is age-related, but more or less random, it is impossible to predict what could happen on the next cycle. It was the right move to cancel the second cycle, particularly in view of the first IVF cycle being better. All I can say is "Try again and see what happens". Sorry I can't be more helpful, but mother nature has a tendency to be unpredictable - especially during hurricane season.
I don't know how long you should wait after a miscarriage, but the wait would have more to do with getting the endometrium in shape than ovaries. The sinus infection had nothing to do with the ovarian response. It was just miserable to go through.
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